Protein ZmPHD30
ZmPHD30 is a protein in the PHD family.
Information
Coreg Name: ZmPHD30
Species: Maize
Coreg Family: PHD
Gene Name(Synonym): PHD30
Uniprot ID: B4FLD4
Subgenome: 1

Protein ZmPHD30

ZmPHD30 is a protein in the PHD family.

Overview of domains present in v5 transcripts
Alfin-likePF00628PF01426
Zm00001eb311820_T004
Zm00001eb311820_T001
Zm00001eb311820_T002
Zm00001eb311820_T003

Protein-DNA Interactions

Meme Logos for Maize v4 Gene IDs


Gene IDTypeMEME LogoSequenceFIMOPosition
Zm00001d020361DAPseq no logo sequence fimo position
Zm00001d020361DAPseq no logo sequence fimo position
Zm00001d020361ChIPseq no logo sequence fimo position
Zm00001d020361PChIPseq no logo sequence fimo position

Interactions where ZmPHD30 is the regulator


There are no protein-dna interactions that fit this criteria.

Interactions where ZmPHD30 is the target  
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There are 80 protein-dna interactions that fit this criteria. download excel sheet

Zm00001eb311820_T004 from maize genome v5

Amino Acid Sequence
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MAKTKQGKRDVDAYTIKGTNKVVRVGDCVLMRPADTDNPPYVARVERMESDGRGSVRVRVRWYYRPEEAKGGRRPFHGAK
ELFLSDHFDTQSAHTIEGKCIVHSFKSYTKLDNVGPEDFYCRFDYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCK
DWFHPSCMGMTIEQAKKIDHYMCSDCAKENGAKRPSNSYSVSPNSDSKIESKRRKR

MAKTKQGKRDVDAYTIKGTNKVVRVGDCVLMRPADTDNPPYVARVERMESDGRGSVRVRVRWYYRPEEAKGGRRPFHGAK
ELFLSDHFDTQSAHTIEGKCIVHSFKSYTKLDNVGPEDFYCRFDYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCK
DWFHPSCMGMTIEQAKKIDHYMCSDCAKENGAKRPSNSYSVSPNSDSKIESKRRKR

MAKTKQGKRDVDAYTIKGTNKVVRVGDCVLMRPADTDNPPYVARVERMESDGRGSVRVRVRWYYRPEEAKGGRRPFHGAK
ELFLSDHFDTQSAHTIEGKCIVHSFKSYTKLDNVGPEDFYCRFDYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCK
DWFHPSCMGMTIEQAKKIDHYMCSDCAKENGAKRPSNSYSVSPNSDSKIESKRRKR

MAKTKQGKRDVDAYTIKGTNKVVRVGDCVLMRPADTDNPPYVARVERMESDGRGSVRVRVRWYYRPEEAKGGRRPFHGAK
ELFLSDHFDTQSAHTIEGKCIVHSFKSYTKLDNVGPEDFYCRFDYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCK
DWFHPSCMGMTIEQAKKIDHYMCSDCAKENGAKRPSNSYSVSPNSDSKIESKRRKR

MAKTKQGKRDVDAYTIKGTNKVVRVGDCVLMRPADTDNPPYVARVERMESDGRGSVRVRVRWYYRPEEAKGGRRPFHGAK
ELFLSDHFDTQSAHTIEGKCIVHSFKSYTKLDNVGPEDFYCRFDYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCK
DWFHPSCMGMTIEQAKKIDHYMCSDCAKENGAKRPSNSYSVSPNSDSKIESKRRKR

MAKTKQGKRDVDAYTIKGTNKVVRVGDCVLMRPADTDNPPYVARVERMESDGRGSVRVRVRWYYRPEEAKGGRRPFHGAK
ELFLSDHFDTQSAHTIEGKCIVHSFKSYTKLDNVGPEDFYCRFDYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCK
DWFHPSCMGMTIEQAKKIDHYMCSDCAKENGAKRPSNSYSVSPNSDSKIESKRRKR

MAKTKQGKRDVDAYTIKGTNKVVRVGDCVLMRPADTDNPPYVARVERMESDGRGSVRVRVRWYYRPEEAKGGRRPFHGAK
ELFLSDHFDTQSAHTIEGKCIVHSFKSYTKLDNVGPEDFYCRFDYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCK
DWFHPSCMGMTIEQAKKIDHYMCSDCAKENGAKRPSNSYSVSPNSDSKIESKRRKR

MAKTKQGKRDVDAYTIKGTNKVVRVGDCVLMRPADTDNPPYVARVERMESDGRGSVRVRVRWYYRPEEAKGGRRPFHGAK
ELFLSDHFDTQSAHTIEGKCIVHSFKSYTKLDNVGPEDFYCRFDYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCK
DWFHPSCMGMTIEQAKKIDHYMCSDCAKENGAKRPSNSYSVSPNSDSKIESKRRKR

Secondary Structure Color Code
BEND region with high backbone curvature without specific hydrogen bonding
HELX_LH_PP_P left-handed polyproline helix
HELX_RH_3T_P right-handed 3-10 helix
HELX_RH_AL_P right-handed alpha helix
HELX_RH_PI_P right-handed pi helix
STRN beta strand
TURN_TY1_P type I turn
UNDETERMINED no data available
Domains Present
PF01426
PF00628
PF00628
Alfin-like
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Nucleotide Sequence
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AAACTACCAAATTACCCCTAGCCCG...

GRMZM2G091265_T01 from maize genome v3

Amino Acid Sequence
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MAKTKQGKRDVDAYTIKGTNKVVRVGDCVLMRPADTDNPPYVARVERMESDGRGSVRVRVRWYYRPEEAKGGRRPFHGAK
ELFLSDHFDTQSAHTIEGKCIVHSFKSYTKLDNVGPEDFYCRFDYKAATGAFTPDRVACEMPYNPDDLMVQCEGCKDWFH
PSCMGMTIEQAKKIDHYMCSDCAKENGAKRPSNSYSVSPNSDSKIESKRRKR

Nucleotide Sequence
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CCCTCCGTGTCGTCAACGGCAAAGC...

GRMZM2G091265_T02 from maize genome v3


Related TFome: pUT5427

Amino Acid Sequence
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MAKTKQGKRDVDAYTIKGTNKVVRVGDCVLMRPADTDNPPYVARVERMESDGRGSVRVRVRWYYRPEEAKGGRRPFHGAK
ELFLSDHFDTQSAHTIEGKCIVHSFKSYTKLDNVGPEDFYCRFDYKAATGAFTPDRVAVYKALPFL

Nucleotide Sequence
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CCCTCCGTGTCGTCAACGGCAAAGC...

GRMZM2G091265_T03 from maize genome v3

Amino Acid Sequence
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MAKTKQGKRDVDAYTIKGTNKVVRVGDCVLMRPADTDNPPYVARVERMESDGRGSVRVRVRWYYRPEEAKGGRRPFHGAK
ELFLSDHFDTQSAHTIEGKCIVHSFKSYTKLDNVGPEDFYCRFDYKAATGAFTPDRVAVYKALPFL

Nucleotide Sequence
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CCCTCCGTGTCGTCAACGGCAAAGC...

GRMZM2G091265_T04 from maize genome v3

Amino Acid Sequence
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MAKTKQGKRDVDAYTIKGTNKVVRVGDCVLMRPADTDNPPYVARVERMESDGRGSVRVRVRWYYRPEEAKGGRRPFHGAK
ELFLSDHFDTQSAHTIEGKCIVHSFKSYTKLDNVGPEDFYCRFDYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCK
DCFLLTARRSIIHLEYLLWSGLGPNNE

Nucleotide Sequence
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CCCTCCGTGTCGTCAACGGCAAAGC...

GRMZM2G091265_T05 from maize genome v3

Amino Acid Sequence
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MAKTKQGKRDVDAYTIKGTNKVVRVGDCVLMRPADTDNPPYVARVERMESDGRGSVRVRVRWYYRPEEAKGGRRPFHGAK
ELFLSDHFDTQSAHTIEGKCIVHSFKSYTKLDNVGPEDFYCRFDYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCK
DWFHPSCMGMTIEQAKKIDHYMCSDCAKENGAKRPSNSYSVSPNSDSKIESKRRKR

Nucleotide Sequence
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CCCTCCGTGTCGTCAACGGCAAAGC...

GRMZM2G091265_T06 from maize genome v3

Amino Acid Sequence
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MAKTKQGKRDVDAYTIKGTNKVVRVGDCVLMRPADTDNPPYVARVERMESDGRGSVRVRVRWYYRPEEAKGGRRPFHGAK
ELFLSDHFDTQSAHTIEGKCIVHSFKSYTKLDNVGPEDFYCRFDYKAATGAFTPDRVAVYKALPFL

Nucleotide Sequence
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CCCTCCGTGTCGTCAACGGCAAAGC...

Zm00001d020361_T001 from maize genome v4

Amino Acid Sequence
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MAKTKQGKRDVDAYTIKGTNKVVRVGDCVLMRPADTDNPPYVARVERMESDGRGSVRVRVRWYYRPEEAKGGRRPFHGAK
ELFLSDHFDTQSAHTIEGKCIVHSFKSYTKLDNVGPEDFYCRFDYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCK
DWFHPSCMGMTIEQAKKIDHYMCSDCAKENGAKRPSNSYSVSPNSDSKFLISASI

Nucleotide Sequence
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CTGCTCCGTTGGAACGGACAGCCGC...

Zm00001eb311820_T001 from maize genome v5

Amino Acid Sequence
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MAKTKQGKRDVDAYTIKGTNKVVRVGDCVLMRPADTDNPPYVARVERMESDGRGSVRVRVRWYYRPEEAKGGRRPFHGAK
ELFLSDHFDTQSAHTIEGKCIVHSFKSYTKLDNVGPEDFYCRFDYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCK
DWFHPSCMGMTIEQAKKIDHYMCSDCAKENGAKRPSNSYSVSPNSDSKSVLF

Nucleotide Sequence
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CAGGCACCCAACATTCTAGCCCTCC...

Zm00001eb311820_T002 from maize genome v5

Amino Acid Sequence
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MAKTKQGKRDVDAYTIKGTNKVVRVGDCVLMRPADTDNPPYVARVERMESDGRGSVRVRVRWYYRPEEAKGGRRPFHGAK
ELFLSDHFDTQSAHTIEGKCIVHSFKSYTKLDNVGPEDFYCRFDYKAATGAFTPDRVACEMPYNPDDLMVQCEGCKDWFH
PSCMGMTIEQAKKIDHYMCSDCAKENGAKRPSNSYSVSPNSDSKIESKRRKR

Nucleotide Sequence
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CTAACCGCTGCTGAAACTACCAAAT...

Zm00001eb311820_T003 from maize genome v5

Amino Acid Sequence
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MAKTKQGKRDVDAYTIKGTNKVVRVGDCVLMRPADTDNPPYVARVERMESDGRGSVRVRVRWYYRPEEAKGGRRPFHGAK
ELFLSDHFDTQSAHTIEGKCIVHSFKSYTKLDNVGPEDFYCRFDYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCK
DCFLLTARRSIIHLEYLLWSGLGPNNE

Nucleotide Sequence
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CTAACCGCTGCTGAAACTACCAAAT...


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